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MTSSL spin labeled D67C mutant of MscS in the open form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VV5 PDB ENTRY 2VV5
Crystallization Crystal Properties Matthews coefficient Solvent content 4.33 71.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.07 α = 90 b = 149.51 β = 90 c = 174.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2011-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.84 22 100 0.11 16 13 16401
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.84 4.97 100 0.68 4.4 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VV5 4.84 102.7 15531 828 99.67 0.34013 0.33939 0.3362 0.35398 0.3443 RANDOM 92.577
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.74 -7.74 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.459 r_dihedral_angle_4_deg 18.265 r_dihedral_angle_3_deg 18.001 r_dihedral_angle_1_deg 6.27 r_angle_other_deg 3.377 r_angle_refined_deg 1.281 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.459 r_dihedral_angle_4_deg 18.265 r_dihedral_angle_3_deg 18.001 r_dihedral_angle_1_deg 6.27 r_angle_other_deg 3.377 r_angle_refined_deg 1.281 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13664 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHASER phasing