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Crystal structure of the mutant D75N I-CreI in complex with its wild- type target (The four central bases, 2NN region, are composed by GTAC from 5' to 3')
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XE0 PDB ENTRY 2XE0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 30% PROPANEDIOL, 0.1M HEPES PH 7.5, 20% PEG400
Crystal Properties Matthews coefficient Solvent content 2.85 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.97 α = 90 b = 71.1 β = 90 c = 46.92 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS SLS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 44.51 99.9 0.07 9.9 4.8 20537 1.9 47.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.41 1.9 4.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2XE0 2.5 34.814 20609 1079 99.68 0.1728 0.17 0.1611 0.2251 0.2126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3022 1.8321 -1.5298
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.13 f_angle_d 1.272 f_chiral_restr 0.065 f_bond_d 0.014 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2472 Nucleic Acid Atoms 980 Solvent Atoms 122 Heterogen Atoms 29
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing