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Crystal Structure of CF34 TCR in complex with HLA-B8/FLR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MI5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 293 11% PEG 20000, 0.2M LiSO4, 0.1M Tris, 6mM CdCl, 4% ethylene glycol, 4% dioxane, pH 8.4, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.43 64.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.564 α = 90 b = 171.807 β = 90 c = 272.69 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 1.0000 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 72.739 99.9 0.0335 0.335 1.889 7.3 72044
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 100 0.013 1.314 0.6 7.5 10411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MI5 2.8 15 61005 3232 100 0.2231 0.22073 0.2235 0.26779 0.2683 RANDOM 39.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.77 -4.2 1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_3_deg 19.451 r_dihedral_angle_4_deg 18.144 r_dihedral_angle_1_deg 6.755 r_scangle_it 1.641 r_angle_refined_deg 1.245 r_mcangle_it 1.082 r_scbond_it 0.954 r_mcbond_it 0.584 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_3_deg 19.451 r_dihedral_angle_4_deg 18.144 r_dihedral_angle_1_deg 6.755 r_scangle_it 1.641 r_angle_refined_deg 1.245 r_mcangle_it 1.082 r_scbond_it 0.954 r_mcbond_it 0.584 r_nbtor_refined 0.311 r_metal_ion_refined 0.29 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.091 r_symmetry_hbond_refined 0.028 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13425 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 31
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction