3FFC
Crystal Structure of CF34 TCR in complex with HLA-B8/FLR
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3ffcb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | beta2-microglobulin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3ffcb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G | d3ffcg1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | beta2-microglobulin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G | d3ffcg2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | MHC antigen-recognition domain | 8055662 | 3000521 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054581 | 3000071 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054581 | 3000071 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | MHC antigen-recognition domain | 8055662 | 3000521 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8003766 | 3000071 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8003766 | 3000071 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054555 | 3000071 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054555 | 3000071 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07654 | e3ffcA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A | PF00129 | e3ffcA2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: PF00129 | ECOD (1.6) |
F | PF07654 | e3ffcF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F | PF00129 | e3ffcF2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: PF00129 | ECOD (1.6) |
B | PF07654 | e3ffcB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G | PF07654 | e3ffcG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D | PF07686 | e3ffcD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF09291 | e3ffcD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF09291 | ECOD (1.6) |
I | PF07686 | e3ffcI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I | PF09291 | e3ffcI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF09291 | ECOD (1.6) |
E | PF07654 | e3ffcE3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E | PF07686 | e3ffcE4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J | PF07654 | e3ffcJ3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
J | PF07686 | e3ffcJ4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
I | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
J | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
MH1 HLA-B*0801 | I-ALPHA | Homo sapiens (human) | HLA-B*0801, HLA-B*0807, HLA-B*0809, HLA-B*0811, HLA-B*0812, HLA-B*0813, HLA-B*0814, HLA-B*0827, HLA-B*0822, HLA-B*0820, HLA-B*0825, HLA-B*0821, HLA-B*0818, HLA-B*0828, HLA-B*0831, HLA-B*0833, HLA-B*0835, HLA-B*0837, HLA-B*0840, HLA-B*0839, HLA-B*0842, HLA-B*0843, HLA-B*0853, HLA-B*0858, HLA-B*0848, HLA-B*0849, HLA-B*0860, HLA-B*0855, HLA-B*9580 | G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE | MH | MH1-ALPHA_B2M | IMGT (202428-2) | |
MH1 HLA-B*0801 | B2M | Homo sapiens (human) | B2M*01, B2M*02 | C-LIKE-DOMAIN C-LIKE | MH | MH1-ALPHA_B2M | IMGT (202428-2) | |
TR CF34 | TR-ALPHA | Homo sapiens (human) | TRAV14/DV4*01, TRAJ49*01, TRAC*01 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-2 | IMGT (202428-2) | |
TR CF34 | TR-BETA-2 | Homo sapiens (human) | TRBV11-2*03, TRBJ2-7*01, TRBC2*01, TRBC2*02 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 | TR | TR-ALPHA_BETA-2 | IMGT (202428-2) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00129 | Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I) | Class I Histocompatibility antigen, domains alpha 1 and 2 | - | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |