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Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 12% PEG4000, 4% PEG400, 100MM MES PH6.5
Crystal Properties Matthews coefficient Solvent content 2.4 52.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.78 α = 90 b = 92.333 β = 90 c = 150.495 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-02-26 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC CCD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 47.29 99.7 0.07 17.4 4.9 39577 2 63.43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99.7 0.56 3.2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 2.5 36.42 39514 1983 99.6 0.1745 0.1723 0.1837 0.2172 0.1847 RANDOM 67.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.894 8.9259 -12.8199
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 21.06 t_omega_torsion 3.02 t_angle_deg 1.28 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 21.06 t_omega_torsion 3.02 t_angle_deg 1.28 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6258 Nucleic Acid Atoms 1063 Solvent Atoms 356 Heterogen Atoms 48
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling SHARP phasing