Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | Peptidase_C14 | e3zvkE1 | A: beta barrels | X: Baculovirus p35 protein-related | H: RIFT-related | T: Phage tail proteins | F: Peptidase_C14 | ECOD (v294.2) |
| F | Peptidase_M14 | e3zvkF1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
| G | Peptidase_M14 | e3zvkG1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
| H | Peptidase_M14 | e3zvkH1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
| A | Thioredoxin | e3zvkA1 | A: beta barrels | X: Baculovirus p35 protein-related | H: RIFT-related | T: Phage tail proteins | F: Thioredoxin | ECOD (v294.2) |
| B | Peptidase_M14 | e3zvkB1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
| C | Peptidase_M14 | e3zvkC1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
| D | Peptidase_M14 | e3zvkD1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
| B | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
| C | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
| D | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| J [auth Y] | DNA | - | - | - |
| I [auth X] | DNA | - | - | - |
| ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB | - | - | ||
| TOXIN OF TOXIN-ANTITOXIN SYSTEM | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR051734 | Type II toxin-antitoxin VapB antitoxins | Family | |
| IPR047976 | Antitoxin VapB2-like | Family | |
| IPR037914 | SpoVT-AbrB domain superfamily | Homologous Superfamily | |
| IPR007159 | SpoVT-AbrB domain | Domain | |
| IPR002716 | PIN domain | Domain | |
| IPR029060 | PIN-like domain superfamily | Homologous Superfamily | |
| IPR022907 | VapC family | Family | |
| IPR050556 | Type II toxin-antitoxin system RNase | Family |














