3ZVK
Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01850 | e3zvkA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF01850 | ECOD (1.6) |
B | PF01850 | e3zvkB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF01850 | ECOD (1.6) |
C | PF01850 | e3zvkC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF01850 | ECOD (1.6) |
D | PF01850 | e3zvkD1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF01850 | ECOD (1.6) |
E | PF04014 | e3zvkE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: PF04014 | ECOD (1.6) |
F | PF04014 | e3zvkF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: PF04014 | ECOD (1.6) |
G | PF04014 | e3zvkG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: PF04014 | ECOD (1.6) |
H | PF04014 | e3zvkH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: PF04014 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
B | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
C | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
D | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01850 | PIN domain (PIN) | PIN domain | - | Domain | |
PF04014 | Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin) | Antidote-toxin recognition MazE, bacterial antitoxin | AbrB-like is a family of small proteins that operate in conjunction with a cognate toxin molecule. The commonly attributed role of toxin-antitoxin systems is to maintain low-copy number plasmids from one generation to the next. Such gene-pairs are al ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
TOXIN OF TOXIN-ANTITOXIN SYSTEM | - | - | ||
ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB | - | - | ||
I [auth X] | DNA | - | - | - |
J [auth Y] | DNA | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002716 | PIN domain | Domain | |
IPR029060 | PIN-like domain superfamily | Homologous Superfamily | |
IPR022907 | VapC family | Family | |
IPR047976 | Antitoxin VapB2-like | Family | |
IPR037914 | SpoVT-AbrB domain superfamily | Homologous Superfamily | |
IPR007159 | SpoVT-AbrB domain | Domain |