☰ Navigation Tabs
Snapshot 3 of RIG-I scanning on RNA duplex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YKG PDB ENTRY 2YKG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 pH 9
Crystal Properties Matthews coefficient Solvent content 2.36 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.252 α = 90 b = 75.996 β = 90 c = 207.279 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.3 98.7 0.06 11.4 3.4 26729 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.4 0.57 1.9 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YKG 2.5 25 25350 1343 100 0.23205 0.22902 0.2221 0.28791 0.28 RANDOM 66.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 2.68 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.945 r_dihedral_angle_3_deg 20.865 r_dihedral_angle_4_deg 15.896 r_dihedral_angle_1_deg 6.455 r_scangle_it 2.393 r_scbond_it 1.553 r_angle_refined_deg 1.515 r_mcangle_it 1.099 r_mcbond_it 0.581 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.945 r_dihedral_angle_3_deg 20.865 r_dihedral_angle_4_deg 15.896 r_dihedral_angle_1_deg 6.455 r_scangle_it 2.393 r_scbond_it 1.553 r_angle_refined_deg 1.515 r_mcangle_it 1.099 r_mcbond_it 0.581 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4856 Nucleic Acid Atoms 424 Solvent Atoms 60 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement PHASER phasing