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Wild type beta-lactamase DERIVED FROM CHROMOHALOBACTER SP.560
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZKJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 0.2M NACL, 0.2M MAGNESIUM FORMATE, 30% PEG3350, 50MM HEPES BUFFER, PH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.171 α = 90 b = 116.171 β = 90 c = 68.032 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2010-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.9 0.096 5.5 5.8 21572 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.007 100 0.352 5.16 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ZKJ 2.9 40.45 21572 1163 99.9 0.174 0.171 0.1756 0.225 0.2265 RANDOM 41.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.06 0.11 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.126 r_dihedral_angle_4_deg 18.406 r_dihedral_angle_3_deg 15.184 r_dihedral_angle_1_deg 6.909 r_long_range_B_refined 6.857 r_long_range_B_other 6.857 r_scangle_other 3.78 r_mcangle_it 3.259 r_mcangle_other 3.259 r_scbond_it 2.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.126 r_dihedral_angle_4_deg 18.406 r_dihedral_angle_3_deg 15.184 r_dihedral_angle_1_deg 6.909 r_long_range_B_refined 6.857 r_long_range_B_other 6.857 r_scangle_other 3.78 r_mcangle_it 3.259 r_mcangle_other 3.259 r_scbond_it 2.307 r_scbond_other 2.306 r_mcbond_it 2.006 r_mcbond_other 2.006 r_angle_refined_deg 1.551 r_angle_other_deg 1.327 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8093 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling