☰ Navigation Tabs
The structure of the sugar-binding protein MalE from the phytopathogen Xanthomonas citri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 0.1 M Tris HCl pH 8.0, 3.5 M sodium formate, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K 2 VAPOR DIFFUSION, SITTING DROP 8 298 0.1 M Tris HCl pH 8.0; 3.5 M Sodium Formate; heavy atom soaking with 1 mM mersalyl acid, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.971 α = 90 b = 122.971 β = 90 c = 304.28 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2010-12-06 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2010-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.00662 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE ID23-1 1.00591 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 50 99 0.059 10 68944 41.76
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.202 47.818 0.02 68944 64277 3254 92.45 0.2282 0.191 0.189 0.184 0.2282 0.2211 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.152 4.152 -8.304
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.019 f_angle_d 1.078 f_chiral_restr 0.076 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6373 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms
Software Software Software Name Purpose MxCuBE data collection SHARP phasing PHENIX refinement XDS data reduction SCALA data scaling