3TGH

GAP50 the anchor in the inner membrane complex of Plasmodium


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1WAR 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION62950.2 M (NH4)2SO4, 0.1 M sodium acetate pH 6.0, 3% DMSO or 3 % ethanol, 40% PEG8000, EVAPORATION, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.6253.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.648α = 90
b = 57.648β = 90
c = 210.625γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.9794SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72097.30.08918.75.24347243472-3-0.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.81000.7422.084.15

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1WAR1.719.44458254347123281000.174540.173240.19874RANDOM35.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.888
r_dihedral_angle_3_deg12.581
r_dihedral_angle_4_deg12.221
r_dihedral_angle_1_deg5.304
r_scangle_it4.731
r_scbond_it2.994
r_mcangle_it2.688
r_mcbond_it1.555
r_angle_refined_deg1.022
r_angle_other_deg0.773
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.888
r_dihedral_angle_3_deg12.581
r_dihedral_angle_4_deg12.221
r_dihedral_angle_1_deg5.304
r_scangle_it4.731
r_scbond_it2.994
r_mcangle_it2.688
r_mcbond_it1.555
r_angle_refined_deg1.022
r_angle_other_deg0.773
r_mcbond_other0.434
r_symmetry_hbond_refined0.27
r_symmetry_vdw_other0.187
r_xyhbond_nbd_refined0.138
r_chiral_restr0.067
r_symmetry_vdw_refined0.019
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2512
Nucleic Acid Atoms
Solvent Atoms260
Heterogen Atoms21

Software

Software
Software NamePurpose
XDSdata scaling
MOLREPphasing
REFMACrefinement
XSCALEdata scaling