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Crystal structure of the type 2 secretion system pilotin GspS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 0.2M MG CHLORIDE, 0.1M TRIS-HCL, 30% PEG3350, pH 8.5, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.35 α = 90 b = 73.35 β = 90 c = 70.73 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47.261 99.9 0.085 24.39 16858 -3 30.384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 98.8 0.01 2.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 47.26 9323 426 100 0.1916 0.1901 0.1992 0.2216 0.2292 RANDOM 38.1188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.33 -0.65 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.447 r_dihedral_angle_4_deg 17.704 r_dihedral_angle_3_deg 12.15 r_dihedral_angle_1_deg 4.408 r_scangle_it 3.575 r_scbond_it 2.127 r_mcangle_it 1.232 r_angle_refined_deg 1.102 r_angle_other_deg 0.827 r_mcbond_it 0.625
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.447 r_dihedral_angle_4_deg 17.704 r_dihedral_angle_3_deg 12.15 r_dihedral_angle_1_deg 4.408 r_scangle_it 3.575 r_scbond_it 2.127 r_mcangle_it 1.232 r_angle_refined_deg 1.102 r_angle_other_deg 0.827 r_mcbond_it 0.625 r_mcbond_other 0.155 r_chiral_restr 0.058 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 743 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 4
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XDS data reduction SOLVE phasing