X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529820% PEG 4000, 0.1 M sodium acetate, 0.2 M ammonium acetate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3948.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.94α = 90
b = 120.859β = 90
c = 286.238γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX225HE2009-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9793APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.520906744660701

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5204854043686227894.410.218680.215920.27131RANDOM23.433
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.91-3.525.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.536
r_dihedral_angle_3_deg17.229
r_dihedral_angle_4_deg16.152
r_dihedral_angle_1_deg13.475
r_scangle_it2.454
r_scbond_it1.729
r_angle_refined_deg1.587
r_mcangle_it1.05
r_angle_other_deg0.929
r_mcbond_it0.841
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.536
r_dihedral_angle_3_deg17.229
r_dihedral_angle_4_deg16.152
r_dihedral_angle_1_deg13.475
r_scangle_it2.454
r_scbond_it1.729
r_angle_refined_deg1.587
r_mcangle_it1.05
r_angle_other_deg0.929
r_mcbond_it0.841
r_symmetry_vdw_other0.257
r_nbd_other0.203
r_nbd_refined0.201
r_nbtor_refined0.188
r_symmetry_vdw_refined0.163
r_xyhbond_nbd_refined0.152
r_mcbond_other0.136
r_symmetry_hbond_refined0.102
r_chiral_restr0.091
r_nbtor_other0.09
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8770
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms

Software

Software
Software NamePurpose
ADSCdata collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling