Experiment: 3RKW

Structural characterisation of staphylococcus aureus biotin protein ligase

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3RIR

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
3.93	68.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 94.598	α = 90
b = 94.598	β = 90
c = 130.626	γ = 90

Symmetry
Space Group	P 42 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX1	1.0	Australian Synchrotron	MX1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	40	98.2				20973

Refinement

Statistics
Diffraction ID	Structure Solution Method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		3RIR	2.5	39.553	1.34	20751	1065	98.02	0.2155	0.2129	0.1889	0.2627	0.241	Random

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.6623			1.6623		-3.3245

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	20.746
f_angle_d	2.03
f_chiral_restr	0.114
f_bond_d	0.022
f_plane_restr	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2613
Nucleic Acid Atoms
Solvent Atoms	97
Heterogen Atoms	37

Software

Software
Software Name	Purpose
Blu-Ice	data collection
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling