☰ Navigation Tabs
The crystal structure of I-LtrI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QQY PDB ENTRY 3QQY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1M Bis-Tris, pH 6.5, 0.2M MgCl2, 20% PEG 3500, 1mM MnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.21 44.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.089 α = 90 b = 42.595 β = 110.63 c = 103.195 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2010-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.977 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 48.29 98.9 0.065 13.2 6.8 12740 12060 356.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 98.7 0.24 0.425 6.1 6.5 1248
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3QQY 2.704 48.29 12740 12060 679 98.58 0.19622 0.19213 0.1926 0.26952 0.2723 RANDOM 52.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.25 -0.27 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.89 r_dihedral_angle_4_deg 21.873 r_dihedral_angle_3_deg 19.828 r_dihedral_angle_1_deg 5.846 r_angle_refined_deg 1.337 r_scangle_it 1.306 r_scbond_it 0.819 r_mcangle_it 0.592 r_mcbond_it 0.301 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.89 r_dihedral_angle_4_deg 21.873 r_dihedral_angle_3_deg 19.828 r_dihedral_angle_1_deg 5.846 r_angle_refined_deg 1.337 r_scangle_it 1.306 r_scbond_it 0.819 r_mcangle_it 0.592 r_mcbond_it 0.301 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2356 Nucleic Acid Atoms 1103 Solvent Atoms 43 Heterogen Atoms 5
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling