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Crystal Structure of BoxB in mixed valent state with bound benzoyl-CoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 10% PEG 4000, 0.1M sodium acetate, 0.1M Li2SO4, 18% glycerol, 5 mM benzoyl-CoA, 1 mM NADPH, 0.1 mg/ml BoxA
10 mM Pipes, 0.1 M KCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.52 51.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.18 α = 90 b = 76.65 β = 108.34 c = 148.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.2137 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 49.4 99.2 98025 98025
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.5 99.9 0.407 0.475 3.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 49.4 98025 93138 4887 99.24 0.17665 0.17417 0.1712 0.22417 0.2171 RANDOM 38.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 -0.75 0.2 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.571 r_dihedral_angle_4_deg 19.459 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_1_deg 6.255 r_scangle_it 4.125 r_scbond_it 2.643 r_angle_refined_deg 1.724 r_mcangle_it 1.62 r_angle_other_deg 0.973 r_mcbond_it 0.872
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.571 r_dihedral_angle_4_deg 19.459 r_dihedral_angle_3_deg 14.874 r_dihedral_angle_1_deg 6.255 r_scangle_it 4.125 r_scbond_it 2.643 r_angle_refined_deg 1.724 r_mcangle_it 1.62 r_angle_other_deg 0.973 r_mcbond_it 0.872 r_mcbond_other 0.22 r_chiral_restr 0.103 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15388 Nucleic Acid Atoms Solvent Atoms 629 Heterogen Atoms 313
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XDS data scaling