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Crystal structure of Lsp1 from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 0.2M NaCl, 20mM phenol, 20% PEG 8000, 0.1M CAPS, pH 11, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.52 51.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 273.16 α = 90 b = 38.753 β = 99.349 c = 75.509 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979700 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.6 0.106 18.75 6.8 17725 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.95 99.8 0.896 1.91 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 37.51 16807 905 98.9 0.239 0.236 0.2316 0.296 0.2839 RANDOM 63.921
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 -1.92 2.49 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.353 r_dihedral_angle_3_deg 19.041 r_dihedral_angle_4_deg 18.007 r_dihedral_angle_1_deg 4.781 r_scangle_it 1.911 r_angle_refined_deg 1.13 r_scbond_it 1.03 r_angle_other_deg 0.814 r_mcangle_it 0.697 r_mcbond_it 0.351
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.353 r_dihedral_angle_3_deg 19.041 r_dihedral_angle_4_deg 18.007 r_dihedral_angle_1_deg 4.781 r_scangle_it 1.911 r_angle_refined_deg 1.13 r_scbond_it 1.03 r_angle_other_deg 0.814 r_mcangle_it 0.697 r_mcbond_it 0.351 r_chiral_restr 0.061 r_mcbond_other 0.056 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5031 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms
Software Software Software Name Purpose HKL-3000 phasing MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-3000 data scaling