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Crystal structure of a bsmA homolog (Mpe_A2762) from Methylobium petroleophilum PM1 at 1.91 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.90M lithium chloride, 6.00% polyethylene glycol 6000, 0.1M HEPES pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.49 50.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.508 α = 90 b = 63.203 β = 97.8 c = 104.504 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-09-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537,0.9796,0.9793 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 28.923 96.6 0.042 10.4 43643 -3 32.356
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.98 97.6 0.543 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.91 28.923 43627 2199 98.99 0.1715 0.1694 0.1719 0.2109 0.207 RANDOM 35.7943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.29 -0.46 2.22 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.801 r_dihedral_angle_4_deg 18.932 r_dihedral_angle_3_deg 13.268 r_scangle_it 6.735 r_dihedral_angle_1_deg 6.729 r_scbond_it 4.816 r_mcangle_it 2.912 r_mcbond_it 1.899 r_angle_refined_deg 1.512 r_angle_other_deg 0.893
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.801 r_dihedral_angle_4_deg 18.932 r_dihedral_angle_3_deg 13.268 r_scangle_it 6.735 r_dihedral_angle_1_deg 6.729 r_scbond_it 4.816 r_mcangle_it 2.912 r_mcbond_it 1.899 r_angle_refined_deg 1.512 r_angle_other_deg 0.893 r_mcbond_other 0.778 r_chiral_restr 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3971 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 7
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing