☰ Navigation Tabs
Crystal Structure of GBS52, the minor pilin in gram-positive pathogen Streptococcus agalactiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 20% PEG1500, 0.1M HEPES buffer, 0.2M Ammonium Citrate, 0.01M CaCl2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.34 47.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.481 α = 90 b = 52.222 β = 101.79 c = 61.006 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 26.81 99.4 0.048 14.3 3.01 23655 23655
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 97.3 0.157 4.6 2.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.8 26.81 22438 1216 99.39 0.20079 0.19914 0.1976 0.23042 0.2298 RANDOM 18.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.81 0.41 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.905 r_dihedral_angle_3_deg 13.593 r_dihedral_angle_4_deg 11.349 r_dihedral_angle_1_deg 5.957 r_scangle_it 3.847 r_scbond_it 2.259 r_angle_refined_deg 1.37 r_mcangle_it 1.324 r_mcbond_it 0.696 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.905 r_dihedral_angle_3_deg 13.593 r_dihedral_angle_4_deg 11.349 r_dihedral_angle_1_deg 5.957 r_scangle_it 3.847 r_scbond_it 2.259 r_angle_refined_deg 1.37 r_mcangle_it 1.324 r_mcbond_it 0.696 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1858 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement d*TREK data reduction d*TREK data scaling