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Crystal Structure of MT-SP1 in complex with benzamidine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EAX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 297 0.1M Tris.HCl, pH 8.0, 1.5M ammonium sulfate, 3% ethanol, vapor diffusion, hanging drop, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.33 47.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.888 α = 90 b = 141.701 β = 90 c = 51.995 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2008-01-30
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.04 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 70.89 91.6 0.106 5.2 5.7 70901
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 94.6 0.485 2.9 7236
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EAX 1.2 50 70879 3553 91.56 0.1446 0.1428 0.1517 0.1774 0.1854 RANDOM 16.0191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 0.36 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.239 r_dihedral_angle_4_deg 17.406 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 6.531 r_scangle_it 6.115 r_scbond_it 4.547 r_mcangle_it 3.128 r_rigid_bond_restr 2.556 r_mcbond_it 2.251 r_angle_refined_deg 2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.239 r_dihedral_angle_4_deg 17.406 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 6.531 r_scangle_it 6.115 r_scbond_it 4.547 r_mcangle_it 3.128 r_rigid_bond_restr 2.556 r_mcbond_it 2.251 r_angle_refined_deg 2.14 r_chiral_restr 0.147 r_bond_refined_d 0.023 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1865 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing