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Crystal structure of a putative thiosulfate sulfurtransferase from Mycobacterium thermoresistible
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HZU PDB entry 3hzu
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 289 48.2 mg/mL MythA.01241.a.A1 peak2 PS00652 against Emerald BioSystems Wizard III screen condition 13 B1 8% PEG 4000, 0.1 M NaOAc pH 4.6, with 20% ethylene glycol as cryo-protectant, crystal tracking ID 216651b1, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.22 α = 90 b = 83.37 β = 90 c = 146.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.97946 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.9 0.111 14.82 5.5 41111 40671 -3 25.362
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 99.8 0.536 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3hzu 2.1 50 40509 2000 98.55 0.1839 0.1823 0.1876 0.2151 0.1963 RANDOM 21.7541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.26 2.72 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.995 r_dihedral_angle_4_deg 16.315 r_dihedral_angle_3_deg 14.354 r_dihedral_angle_1_deg 5.578 r_scangle_it 3.137 r_scbond_it 1.9 r_angle_refined_deg 1.46 r_mcangle_it 1.303 r_mcbond_it 0.718 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.995 r_dihedral_angle_4_deg 16.315 r_dihedral_angle_3_deg 14.354 r_dihedral_angle_1_deg 5.578 r_scangle_it 3.137 r_scbond_it 1.9 r_angle_refined_deg 1.46 r_mcangle_it 1.303 r_mcbond_it 0.718 r_chiral_restr 0.096 r_bond_refined_d 0.019 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4531 Nucleic Acid Atoms Solvent Atoms 441 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction