☰ Navigation Tabs
Crystal structure of Ru(p-cymene)/apo-H49AFr
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 AMMONIUM SULFATE, CADMIUM SLFATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.15 60.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.703 α = 90 b = 181.703 β = 90 c = 181.703 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2010-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 20743
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 24.28 19182 1040 97.1 0.1956 0.1934 0.2373 0.2362 RANDOM 23.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.547 r_dihedral_angle_4_deg 19.923 r_dihedral_angle_3_deg 15.817 r_dihedral_angle_1_deg 5.059 r_scangle_it 4.709 r_scbond_it 3.041 r_mcangle_it 1.853 r_angle_refined_deg 1.498 r_mcbond_it 1.164 r_symmetry_metal_ion_refined 0.549
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.547 r_dihedral_angle_4_deg 19.923 r_dihedral_angle_3_deg 15.817 r_dihedral_angle_1_deg 5.059 r_scangle_it 4.709 r_scbond_it 3.041 r_mcangle_it 1.853 r_angle_refined_deg 1.498 r_mcbond_it 1.164 r_symmetry_metal_ion_refined 0.549 r_symmetry_vdw_refined 0.332 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.272 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1383 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling