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Restriction endonuclease in complex with substrate DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 294 0.1M sodium acetate PH 4.5, 200MM, ammonium sulfate, 30% PEG400, 1.5% 1,2,3-heptanetriol, VAPOR, DIFFUSION, SITTING DROP, TEMPERATURE 294K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.09 41.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.31 α = 90 b = 72.91 β = 101.99 c = 88.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2008-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.976 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 98.7 0.074 0.074 5 2.8 118539 118539 14.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 99.4 0.266 0.266 2.8 2.2 17399
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.3 19.51 118512 118512 5962 98.61 0.1723 0.1723 0.17173 0.1776 0.18318 0.19 RANDOM 19.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.49 -0.61 1.79 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.427 r_dihedral_angle_4_deg 18.648 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_1_deg 5.897 r_angle_other_deg 3.806 r_scangle_it 2.302 r_scbond_it 1.56 r_angle_refined_deg 1.261 r_mcangle_it 1.131 r_mcbond_it 0.627
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.427 r_dihedral_angle_4_deg 18.648 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_1_deg 5.897 r_angle_other_deg 3.806 r_scangle_it 2.302 r_scbond_it 1.56 r_angle_refined_deg 1.261 r_mcangle_it 1.131 r_mcbond_it 0.627 r_symmetry_vdw_refined 0.267 r_nbd_other 0.245 r_nbd_refined 0.218 r_symmetry_vdw_other 0.211 r_nbtor_refined 0.191 r_symmetry_hbond_refined 0.155 r_metal_ion_refined 0.126 r_xyhbond_nbd_refined 0.118 r_nbtor_other 0.104 r_chiral_restr 0.08 r_gen_planes_refined 0.01 r_bond_refined_d 0.009 r_gen_planes_other 0.008 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3478 Nucleic Acid Atoms 404 Solvent Atoms 470 Heterogen Atoms 57
Software Software Software Name Purpose MAR345 data collection SHELXCD phasing SHELXD phasing SHELXE model building SHARP phasing ARP/wARP model building REFMAC refinement MOSFLM data reduction SCALA data scaling