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 3NDH | pdb_00003ndh

Restriction endonuclease in complex with substrate DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BMreCe3ndhB1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: MreCECOD (v295.2)
ATorS_sensor_domaine3ndhA1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Histidine kinase associated sensor domainsT: Histidine kinase associated sensor domainsF: TorS_sensor_domainECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.600.30 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease Chain ACATH (4.3.0)
A3.40.600.30 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF15514Restriction endonuclease ThaI (ThaI)Restriction endonuclease ThaIThis family of restriction endonucleases belongs to the PD-(D/E)XK superfamily. It cuts the recognition site CG^CG leaving blunt ends [1]. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR038374Type II restriction endonuclease subunit R superfamilyHomologous Superfamily
A, B
IPR029128Type II restriction endonuclease subunit RFamily