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An inhibited conformation for the protein kinase domain of the Saccharomyces cerevisiae AMPK homolog Snf1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 294 10% (w/v) PEG3350 and 50mM Na2SO4, pH 7.5, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.42 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.981 α = 90 b = 76.981 β = 90 c = 286.215 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.9815 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 30 99 19910 19799 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.38 2.48 99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.38 30 17349 872 98.97 0.231 0.23 0.227 0.246 0.2413 RANDOM 59.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.88 2.88 -5.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.142 r_dihedral_angle_4_deg 21.35 r_dihedral_angle_3_deg 16.76 r_dihedral_angle_1_deg 5.605 r_scangle_it 2.105 r_scbond_it 1.293 r_angle_refined_deg 1.27 r_mcangle_it 1.133 r_mcbond_it 0.615 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.142 r_dihedral_angle_4_deg 21.35 r_dihedral_angle_3_deg 16.76 r_dihedral_angle_1_deg 5.605 r_scangle_it 2.105 r_scbond_it 1.293 r_angle_refined_deg 1.27 r_mcangle_it 1.133 r_mcbond_it 0.615 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.211 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2040 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection DENZO data reduction SCALEPACK data scaling COMO phasing