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Cre recombinase-DNA transition state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HOI PDB ENTRY 2HOI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293.15 0.02M calcium chloride, 0.02M sodium acetate, MPD, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.96 58.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.046 α = 90 b = 136.046 β = 90 c = 218.431 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r 2007-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 50 97.2 0.103 7.1 102079 16.17 4.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.29 2.38 95.4 0.462 4.15 7.3 9855
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HOI 2.29 49.57 105050 96905 5105 97.11 0.19426 0.19277 0.1901 0.22218 0.2188 RANDOM 29.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.816 r_dihedral_angle_4_deg 17.352 r_dihedral_angle_3_deg 16.619 r_dihedral_angle_1_deg 5.152 r_scangle_it 3.528 r_scbond_it 2.229 r_angle_refined_deg 1.619 r_mcangle_it 1.446 r_mcbond_it 0.726 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.816 r_dihedral_angle_4_deg 17.352 r_dihedral_angle_3_deg 16.619 r_dihedral_angle_1_deg 5.152 r_scangle_it 3.528 r_scbond_it 2.229 r_angle_refined_deg 1.619 r_mcangle_it 1.446 r_mcbond_it 0.726 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10200 Nucleic Acid Atoms 2844 Solvent Atoms 343 Heterogen Atoms 6
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling