3MGV
Cre recombinase-DNA transition state
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | INT_Cre_C | e3mgvA4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
A | Phage_integrase_N | e3mgvA5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
A | Phage_int_SAM_4 | e3mgvA3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
B | INT_Cre_C | e3mgvB4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
B | Phage_integrase_N | e3mgvB5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
B | Phage_int_SAM_4 | e3mgvB3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
C | INT_Cre_C | e3mgvC4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
C | Phage_integrase_N | e3mgvC5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
C | Phage_int_SAM_4 | e3mgvC3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
D | INT_Cre_C | e3mgvD4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
D | Phage_integrase_N | e3mgvD5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
D | Phage_int_SAM_4 | e3mgvD3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
B | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
C | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
C | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
D | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
D | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Recombinase cre | - | |||
E, G, I, K [auth L] | DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3') | - | - | - |
F, H, J [auth K], L [auth M] | DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011010 | DNA breaking-rejoining enzyme, catalytic core | Homologous Superfamily | |
IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily | |
IPR052925 | Phage Integrase-like Recombinase | Family | |
IPR044068 | Core-binding (CB) domain | Domain | |
IPR002104 | Integrase, catalytic domain | Domain | |
IPR013762 | Integrase-like, catalytic domain superfamily | Homologous Superfamily |