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The Crystal Structure of smu.1229 from Streptococcus mutans UA159
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FXU PDB ENTRY 1FXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 25% (w/v) PEG 3350, 0.15M ammonium sulfate, 0.1M bis-tris, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.28 45.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113 α = 90 b = 113 β = 90 c = 60.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.9792 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 84.2 26516 22326 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 78.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FXU 1.8 18.83 21180 1114 84.12 0.20801 0.20607 0.24452 0.2643 RANDOM 30.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.8 -1.4 -2.8 4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.915 r_dihedral_angle_4_deg 22.426 r_dihedral_angle_3_deg 15.014 r_dihedral_angle_1_deg 6.389 r_scangle_it 3.041 r_scbond_it 2.147 r_angle_refined_deg 1.507 r_mcangle_it 1.44 r_mcbond_it 0.935 r_symmetry_hbond_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.915 r_dihedral_angle_4_deg 22.426 r_dihedral_angle_3_deg 15.014 r_dihedral_angle_1_deg 6.389 r_scangle_it 3.041 r_scbond_it 2.147 r_angle_refined_deg 1.507 r_mcangle_it 1.44 r_mcbond_it 0.935 r_symmetry_hbond_refined 0.317 r_nbtor_refined 0.316 r_xyhbond_nbd_refined 0.245 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1803 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 5
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling