Experiment: 3KYX

X-RAY DIFFRACTION - NEUTRON DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1BRF

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	hanging drop			3.8 M sodium/potassium phosphate, hanging drop

Crystal Properties
Matthews coefficient	Solvent content
2.31	46.86

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	295	IMAGE PLATE	MAR345			M	SINGLE WAVELENGTH
2	1	neutron	295	IMAGE PLATE	MAATEL LADI-III		2008-05-07	L	LAUE

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.675	27.116	82.3	0.095	0.095					14.9	6.1		6814

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	R Merge I (Observed)	R-Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.675	1.77		0.099	0.099					7	1.4	304
1	1.77	1.87		0.101	0.101					6.7	2.9	622
1	1.87	2		0.098	0.098					6.8	5.7	706
1	2	2.16		0.1	0.1					6.4	7.7	701
1	2.16	2.37		0.102	0.102					5.8	7.9	673
1	2.37	2.65		0.099	0.099					6.1	7	629
1	2.65	3.06		0.096	0.096					5.8	6.5	559
1	3.06	3.75		0.093	0.093					6.3	6.5	494
1	3.75	5.3		0.092	0.092					5.8	7.3	387
1	5.3	27.12		0.067	0.067					6.9	5.4	236

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
NEUTRON DIFFRACTION	MOLECULAR REPLACEMENT	1.675	12.627		1.56		5311	305	91.1		0.17	0.169		0.197			21.155

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.851			-6.575		-5.814

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	19.981
f_angle_d	0.969
f_chiral_restr	0.072
f_bond_d	0.005
f_plane_restr	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	403
Nucleic Acid Atoms
Solvent Atoms	28
Heterogen Atoms	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3KYX | pdb_00003kyx