1BRF | pdb_00001brf

Rubredoxin (Wild Type) from Pyrococcus Furiosus

PDB DOI: https://doi.org/10.2210/pdb1BRF/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Pyrococcus furiosus
Mutation(s): No

Deposited: 1998-08-24 Released: 1998-09-02
Deposition Author(s): Bau, R., Rees, D.C., Kurtz, D.M., Scott, R.A., Huang, H., Adams, M.W.W., Eidsness, M.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.95 Å
R-Value Free:
0.162 (Depositor)
R-Value Work:
0.163 (DCC)
R-Value Observed:
0.132 (Depositor)

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This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of Rubredoxin from Pyrococcus Furiosus at 0.95 Angstroms Resolution, and the structures of N-terminal methionine and formylmethionine variants of Pf Rd. Contributions of N-terminal interactions to thermostability

Bau, R., Rees, D.C., Kurtz, D.M., Scott, R.A., Huang, H., Adams, M.W.W., Eidsness, M.K.

(1998) J Biol Inorg Chem 3: 484-493

Macromolecule Content

Total Structure Weight: 5.96 kDa
Atom Count: 600
Modeled Residue Count: 53
Deposited Residue Count: 53
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (RUBREDOXIN)	A	53	Pyrococcus furiosus	Mutation(s): 0
UniProt
Find proteins for P24297 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore P24297 Go to UniProtKB: P24297
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P24297
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.95 Å
R-Value Free: 0.162 (Depositor)
R-Value Work: 0.163 (DCC)
R-Value Observed: 0.132 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.123	α = 90
b = 34.874	β = 90
c = 43.683	γ = 90

Software Package:

Software Name	Purpose
SHELXL	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 1998-09-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1998-09-02
Type: Initial release
Version 1.1: 2007-10-21
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2024-02-07
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.