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M296I mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 30% PEG 4000, 0.1M HEPES pH 7.0, 4% butyrolactone, 0.2M Magnesium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.565 α = 90 b = 93.565 β = 90 c = 120.931 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.98 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 74 99.5 0.1 0.11 11.4 3.9 13868 2.5 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.95 99.7 0.6 0.7 2.3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WNE 2.8 74 13086 690 99.5 0.24062 0.23859 0.27978 0.2625 RANDOM 65.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.59 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.168 r_dihedral_angle_3_deg 11.302 r_dihedral_angle_4_deg 9.626 r_dihedral_angle_1_deg 3.076 r_angle_refined_deg 0.43 r_mcangle_it 0.249 r_scangle_it 0.144 r_mcbond_it 0.139 r_scbond_it 0.078 r_chiral_restr 0.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.168 r_dihedral_angle_3_deg 11.302 r_dihedral_angle_4_deg 9.626 r_dihedral_angle_1_deg 3.076 r_angle_refined_deg 0.43 r_mcangle_it 0.249 r_scangle_it 0.144 r_mcbond_it 0.139 r_scbond_it 0.078 r_chiral_restr 0.031 r_bond_refined_d 0.001 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3756 Nucleic Acid Atoms 251 Solvent Atoms 38 Heterogen Atoms 1
Software Software Software Name Purpose DNA data collection REFMAC refinement MOSFLM data reduction SCALA data scaling