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Crystal structure of putative MotB like protein DVU_2228 from Desulfovibrio vulgaris.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1M Bis-Tris pH 6.5,
30% PEG MME 550
0.05M Calcium Chloride, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.91 35.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.218 α = 90 b = 83.709 β = 90 c = 85.891 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-05 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9793 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 50 98.9 0.054 0.052 30.3 4.8 20244 20244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.03 2.07 79.9 0.086 0.09 22.4 4.5 793
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.03 50 20197 1033 99.84 0.189 0.185 0.1885 0.251 0.2481 RANDOM 21.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -0.06 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.686 r_dihedral_angle_4_deg 16.697 r_dihedral_angle_3_deg 15.076 r_dihedral_angle_1_deg 5.919 r_scangle_it 4.384 r_scbond_it 2.645 r_mcangle_it 1.751 r_angle_refined_deg 1.535 r_mcbond_it 0.984 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.686 r_dihedral_angle_4_deg 16.697 r_dihedral_angle_3_deg 15.076 r_dihedral_angle_1_deg 5.919 r_scangle_it 4.384 r_scbond_it 2.645 r_mcangle_it 1.751 r_angle_refined_deg 1.535 r_mcbond_it 0.984 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2548 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing SHELXE model building CCP4 phasing