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Crystal structure of functional region of UafA from Staphylococcus saprophyticus in C2 form at 2.45 angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 300mM tri-lithium citrate, 20% PEG 3350, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.64 53.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.585 α = 90 b = 110.442 β = 106.49 c = 49.547 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2005-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32B2 1.00000 SPring-8 BL32B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 98.7 0.061 4.7 18642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.54 90.4 0.23 4 1697
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.45 19.83 17271 1328 100 0.20905 0.20628 0.2076 0.24574 0.1999 RANDOM 34.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 -0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_4_deg 11.898 r_dihedral_angle_1_deg 4.768 r_angle_refined_deg 0.868 r_scangle_it 0.501 r_nbtor_refined 0.302 r_scbond_it 0.298 r_mcangle_it 0.256 r_nbd_refined 0.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_4_deg 11.898 r_dihedral_angle_1_deg 4.768 r_angle_refined_deg 0.868 r_scangle_it 0.501 r_nbtor_refined 0.302 r_scbond_it 0.298 r_mcangle_it 0.256 r_nbd_refined 0.162 r_symmetry_vdw_refined 0.162 r_mcbond_it 0.143 r_xyhbond_nbd_refined 0.085 r_symmetry_hbond_refined 0.06 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3082 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 6
Software Software Software Name Purpose DM model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling DM phasing