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Human glutathione transferase a4-4 with GSDHN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GUL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 24% PEG 4000, 0.1 M sodium acetate trihydrate, pH 4.6, and 0.2 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.61 52.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.023 α = 90 b = 153.041 β = 103.1 c = 60.831 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.7 0.129 11.762 4.7 79642 79642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 74.2 0.717 2.1 6089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1GUL 1.97 76.47 73170 73170 3632 98.89 0.209 0.209 0.206 0.2128 0.252 0.2545 RANDOM 39.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -2.4 0.62 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.944 r_dihedral_angle_3_deg 15.182 r_dihedral_angle_4_deg 12.997 r_scangle_it 6.03 r_dihedral_angle_1_deg 5.256 r_scbond_it 3.957 r_mcangle_it 3.344 r_mcbond_it 2.178 r_angle_refined_deg 1.335 r_angle_other_deg 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.944 r_dihedral_angle_3_deg 15.182 r_dihedral_angle_4_deg 12.997 r_scangle_it 6.03 r_dihedral_angle_1_deg 5.256 r_scbond_it 3.957 r_mcangle_it 3.344 r_mcbond_it 2.178 r_angle_refined_deg 1.335 r_angle_other_deg 0.88 r_mcbond_other 0.663 r_chiral_restr 0.074 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7178 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 129
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection PHASER phasing