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Switching the Chirality of the Metal Environment Alters the Coordination Mode in Designed Peptides.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JGO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 293 30% PEG 200, 5% PEG 3000, pH 6.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.723 α = 90 b = 29.237 β = 119.6 c = 44.385 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MAR CCD 2008-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 96.5 0.06 54.026 7.1 8646 9096
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.74 91.1 0.187 4.9 387
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2jgo 1.71 14.68 8646 9085 440 96.49 0.183 0.181 0.1872 0.224 0.2349 RANDOM 29.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.12 -0.06 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_3_deg 14.025 r_dihedral_angle_1_deg 4.058 r_scangle_it 2.996 r_scbond_it 2.249 r_angle_refined_deg 1.143 r_mcangle_it 1.09 r_angle_other_deg 0.907 r_mcbond_it 0.883 r_symmetry_hbond_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_3_deg 14.025 r_dihedral_angle_1_deg 4.058 r_scangle_it 2.996 r_scbond_it 2.249 r_angle_refined_deg 1.143 r_mcangle_it 1.09 r_angle_other_deg 0.907 r_mcbond_it 0.883 r_symmetry_hbond_refined 0.293 r_metal_ion_refined 0.263 r_nbd_refined 0.245 r_mcbond_other 0.214 r_symmetry_vdw_refined 0.209 r_nbtor_refined 0.177 r_nbd_other 0.169 r_symmetry_vdw_other 0.153 r_xyhbond_nbd_refined 0.15 r_symmetry_metal_ion_refined 0.112 r_nbtor_other 0.091 r_chiral_restr 0.063 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 708 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction