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Crystal structure of the CERT START domain in complex with HPA-14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2E3N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.417 α = 90 b = 74.717 β = 102.86 c = 77.713 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2005-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 92 0.087 18 3.2 39511
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.94 66 0.452 2.8 3229
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2E3N 1.85 20 36942 1848 91.5 0.205 0.203 0.2016 0.253 0.2518 RANDOM 29.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 1.15 -0.3 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.628 r_dihedral_angle_4_deg 22.314 r_dihedral_angle_3_deg 15.111 r_dihedral_angle_1_deg 6.492 r_scangle_it 4.386 r_scbond_it 2.661 r_mcangle_it 1.687 r_angle_refined_deg 1.548 r_mcbond_it 0.91 r_chiral_restr 0.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.628 r_dihedral_angle_4_deg 22.314 r_dihedral_angle_3_deg 15.111 r_dihedral_angle_1_deg 6.492 r_scangle_it 4.386 r_scbond_it 2.661 r_mcangle_it 1.687 r_angle_refined_deg 1.548 r_mcbond_it 0.91 r_chiral_restr 0.141 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3790 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 56
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling