☰ Navigation Tabs
Crystal structure of N-terminal domain (2-550) of E.coli MnmG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CES PDB ENTRY 3CES
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 1.3M Lithium sulfate, 0.1M Tris-HCl pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 6.39 80.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.593 α = 90 b = 144.593 β = 90 c = 271.019 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.49 50 99.8 0.108 16.462 7.8 42430
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.49 3.61 98.5 0.64 6.1 4150
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CES 3.49 50 42341 2137 99.68 0.229 0.227 0.2238 0.265 0.2597 RANDOM 83.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 0.67 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_3_deg 24.702 r_dihedral_angle_4_deg 21.542 r_dihedral_angle_1_deg 9.775 r_angle_refined_deg 2.333 r_scangle_it 1.778 r_mcangle_it 1.2 r_scbond_it 0.964 r_mcbond_it 0.76 r_chiral_restr 0.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.613 r_dihedral_angle_3_deg 24.702 r_dihedral_angle_4_deg 21.542 r_dihedral_angle_1_deg 9.775 r_angle_refined_deg 2.333 r_scangle_it 1.778 r_mcangle_it 1.2 r_scbond_it 0.964 r_mcbond_it 0.76 r_chiral_restr 0.173 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8136 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection