☰ Navigation Tabs
Crystal structure of the GYF domain of Smy2 in complex with a proline-rich peptide from BBP/ScSF1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 298 1.2M (NH4)2SO4, 0.1M Bicine, pH 9.0, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.15 61.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.4 α = 90 b = 101.4 β = 90 c = 150.7 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-03-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.978522, 0.97875 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.057 100 0.123 17.8 15.1 27942 -3 64.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.878 2.1 10.5 4003
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 48.057 27895 1411 100 0.226 0.225 0.2313 0.25 0.2506 RANDOM 30.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 -2.1 4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.036 r_dihedral_angle_3_deg 14.782 r_dihedral_angle_4_deg 12.794 r_dihedral_angle_1_deg 5.058 r_angle_refined_deg 1.557 r_scangle_it 1.373 r_scbond_it 0.838 r_mcangle_it 0.557 r_mcbond_it 0.291 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.036 r_dihedral_angle_3_deg 14.782 r_dihedral_angle_4_deg 12.794 r_dihedral_angle_1_deg 5.058 r_angle_refined_deg 1.557 r_scangle_it 1.373 r_scbond_it 0.838 r_mcangle_it 0.557 r_mcbond_it 0.291 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3596 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction SHELXCD phasing SHELXE model building