☰ Navigation Tabs
Two chain form of the 66.3 kDa protein from mouse lacking the linker peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FBX PDB ENTRY 3FBX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 12% (w/v) PEG 4000, 200MM NH4AC, 100mM NaAc/HAc pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.18 61.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.57 α = 90 b = 88.22 β = 98.1 c = 63.27 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.80150 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.488 99.8 0.096 0.096 9.5 3.4 31093 31031
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100 0.459 0.459 3.5 3.4 4544
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FBX 2.4 29.488 29465 1557 99.76 0.168 0.16581 0.1659 0.20745 0.2085 RANDOM 28.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 0.07 -0.49 1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.017 r_dihedral_angle_4_deg 18.435 r_dihedral_angle_3_deg 17.199 r_dihedral_angle_1_deg 6.757 r_scangle_it 2.915 r_scbond_it 1.876 r_angle_refined_deg 1.493 r_mcangle_it 1.224 r_mcbond_it 0.634 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.017 r_dihedral_angle_4_deg 18.435 r_dihedral_angle_3_deg 17.199 r_dihedral_angle_1_deg 6.757 r_scangle_it 2.915 r_scbond_it 1.876 r_angle_refined_deg 1.493 r_mcangle_it 1.224 r_mcbond_it 0.634 r_nbtor_refined 0.313 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.172 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.101 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4189 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 146
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction