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Two chain form of the 66.3 kDa protein at 1.8 Angstroem
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FBX PDB ENTRY 3FBX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 12% (w/v) PEG 4000, 200mM NH4AC, 100mM NaAc/HAc pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.37 63.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.737 α = 90 b = 89.56 β = 98.69 c = 64.811 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.5 0.033 32.075 3.2 91683
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 96.2 0.419 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FBX 1.8 29.26 77685 3839 99.87 0.15314 0.15163 0.1511 0.18163 0.1803 RANDOM 24.259
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.44 -0.51 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.654 r_dihedral_angle_4_deg 21.962 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 5.707 r_scangle_it 4.534 r_scbond_it 2.926 r_mcangle_it 1.777 r_angle_refined_deg 1.533 r_mcbond_it 0.955 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.654 r_dihedral_angle_4_deg 21.962 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 5.707 r_scangle_it 4.534 r_scbond_it 2.926 r_mcangle_it 1.777 r_angle_refined_deg 1.533 r_mcbond_it 0.955 r_nbtor_refined 0.323 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.207 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.17 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4180 Nucleic Acid Atoms Solvent Atoms 576 Heterogen Atoms 174
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling