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Crystal structure of putative transcriptional regulator TA0346 from Thermoplasma acidophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.2M AMMONIUM SULFATE, 0.1M NA SULFATE PH4.6, 30% PEG 4K, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.515 α = 90 b = 45.707 β = 90 c = 207.679 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2008-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 92.5 0.064 0.064 40.646 5.4 21233 21233 -3 30.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 88 0.452 0.452 2.6 3.6 1004
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50 21126 21126 1099 92.39 0.204 0.204 0.202 0.2072 0.241 0.2509 RANDOM 27.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.09 0.32 -3.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.997 r_dihedral_angle_3_deg 15.495 r_dihedral_angle_4_deg 6.143 r_scangle_it 5.282 r_dihedral_angle_1_deg 4.968 r_scbond_it 3.912 r_angle_other_deg 3.323 r_angle_refined_deg 2.033 r_mcangle_it 1.881 r_mcbond_it 1.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.997 r_dihedral_angle_3_deg 15.495 r_dihedral_angle_4_deg 6.143 r_scangle_it 5.282 r_dihedral_angle_1_deg 4.968 r_scbond_it 3.912 r_angle_other_deg 3.323 r_angle_refined_deg 2.033 r_mcangle_it 1.881 r_mcbond_it 1.104 r_mcbond_other 0.398 r_chiral_restr 0.121 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.009 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1630 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 2
Software Software Software Name Purpose HKL-2000 data collection HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing SHELXE model building RESOLVE model building ARP/wARP model building CCP4 model building REFMAC refinement Coot model building HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing CCP4 phasing