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Structural base for cyclodextrin hydrolysis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M HEPES, 3.8M NaCl, 3mM CaCl2, pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.79 55.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.758 α = 90 b = 183.758 β = 90 c = 233.272 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9787 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 20 87.9 0.118 0.098 7 38718 44034 52.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.65 2.75 87.9 0.118 0.098 16.1 7 38718
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.65 19.61 36357 2319 100 0.223 0.22 0.2108 0.267 0.254 RANDOM 46.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.987 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_1_deg 4.765 r_angle_refined_deg 0.902 r_scangle_it 0.64 r_mcangle_it 0.392 r_scbond_it 0.367 r_nbtor_refined 0.3 r_mcbond_it 0.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.987 r_dihedral_angle_3_deg 14.666 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_1_deg 4.765 r_angle_refined_deg 0.902 r_scangle_it 0.64 r_mcangle_it 0.392 r_scbond_it 0.367 r_nbtor_refined 0.3 r_mcbond_it 0.216 r_nbd_refined 0.166 r_symmetry_vdw_refined 0.14 r_symmetry_hbond_refined 0.123 r_xyhbond_nbd_refined 0.107 r_metal_ion_refined 0.087 r_chiral_restr 0.059 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9540 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction XSCALE data scaling REFMAC phasing