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Crystal Structure of the DM1 TCR in complex with HLA-B*4405 and decamer EBV antigen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 Bicine, Lithium Sulfate, PEG 3350, pH 9.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.954 α = 90 b = 121.954 β = 90 c = 695.914 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1. APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 100 40244
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.5 100 36429 39229 1970 97.41 0.289 0.289 0.286 0.2825 0.33 0.3179 RANDOM 63.928
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_dihedral_angle_1_deg 20.746 r_dihedral_angle_3_deg 16.244 r_dihedral_angle_4_deg 15.034 r_angle_refined_deg 1.348 r_angle_other_deg 0.98 r_symmetry_vdw_other 0.251 r_symmetry_vdw_refined 0.249 r_symmetry_hbond_refined 0.236 r_scangle_it 0.236
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_dihedral_angle_1_deg 20.746 r_dihedral_angle_3_deg 16.244 r_dihedral_angle_4_deg 15.034 r_angle_refined_deg 1.348 r_angle_other_deg 0.98 r_symmetry_vdw_other 0.251 r_symmetry_vdw_refined 0.249 r_symmetry_hbond_refined 0.236 r_scangle_it 0.236 r_nbd_refined 0.195 r_nbd_other 0.185 r_nbtor_refined 0.18 r_scbond_it 0.162 r_xyhbond_nbd_refined 0.155 r_mcangle_it 0.113 r_chiral_restr 0.108 r_nbtor_other 0.083 r_mcbond_it 0.078 r_mcbond_other 0.028 r_xyhbond_nbd_other 0.011 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20168 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction