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CRYSTAL STRUCTURE OF A PUTATIVE ROSSMANN-LIKE DEHYDROGENASE (CGL2689) FROM CORYNEBACTERIUM GLUTAMICUM AT 2.07 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 20.0% polyethylene glycol 6000, 1.0M lithium chloride, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.25 45.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.79 α = 90 b = 47.07 β = 90 c = 63.24 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97960,0.97905 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 27.951 98.7 0.047 12.28 29174 -3 30.352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.14 98.7 0.433 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.07 27.951 29123 1479 99.43 0.193 0.191 0.1984 0.223 0.2379 RANDOM 31.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.74 2 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.513 r_dihedral_angle_4_deg 16.73 r_dihedral_angle_3_deg 11.265 r_scangle_it 4.291 r_dihedral_angle_1_deg 3.561 r_scbond_it 3.29 r_mcangle_it 1.689 r_angle_refined_deg 1.525 r_angle_other_deg 1.383 r_mcbond_it 1.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.513 r_dihedral_angle_4_deg 16.73 r_dihedral_angle_3_deg 11.265 r_scangle_it 4.291 r_dihedral_angle_1_deg 3.561 r_scbond_it 3.29 r_mcangle_it 1.689 r_angle_refined_deg 1.525 r_angle_other_deg 1.383 r_mcbond_it 1.138 r_nbd_refined 0.175 r_mcbond_other 0.163 r_symmetry_vdw_other 0.149 r_nbtor_refined 0.148 r_nbd_other 0.143 r_xyhbond_nbd_refined 0.095 r_chiral_restr 0.093 r_nbtor_other 0.073 r_symmetry_vdw_refined 0.066 r_symmetry_hbond_refined 0.035 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3445 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing