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The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2* bound to one of its products decanoic acid
Crystallization Crystal Properties Matthews coefficient Solvent content 2.19 43.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.53 α = 90 b = 64.263 β = 99.01 c = 50.375 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 25 22587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 25 22587 1219 97.85 0.17859 0.17628 0.1762 0.22009 0.2193 RANDOM 29.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.51 -0.76 -1.05 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.141 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 12.613 r_dihedral_angle_1_deg 4.9 r_scangle_it 3.729 r_scbond_it 2.428 r_mcangle_it 1.491 r_angle_refined_deg 1.179 r_mcbond_it 0.835 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.141 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 12.613 r_dihedral_angle_1_deg 4.9 r_scangle_it 3.729 r_scbond_it 2.428 r_mcangle_it 1.491 r_angle_refined_deg 1.179 r_mcbond_it 0.835 r_nbtor_refined 0.307 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_metal_ion_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2074 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement