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CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.36 277 0.2M magnesium chloride, 8.2% Ethanol, 0.1M Imidazole pH 8.36, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 45.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.522 α = 90 b = 31.879 β = 115.8 c = 86.369 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-05-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97929 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 77.85 87.2 0.088 0.088 5.6 3.1 13583 31.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 97.9 0.475 0.475 1.5 3.1 2201
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 77.85 13555 660 86.47 0.225 0.223 0.2293 0.267 0.2706 RANDOM 29.623
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 -0.52 3.7 -2.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.706 r_dihedral_angle_4_deg 20.332 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 3.139 r_mcangle_it 1.63 r_angle_refined_deg 1.535 r_scangle_it 1.325 r_mcbond_it 1.139 r_angle_other_deg 0.956 r_scbond_it 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.706 r_dihedral_angle_4_deg 20.332 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 3.139 r_mcangle_it 1.63 r_angle_refined_deg 1.535 r_scangle_it 1.325 r_mcbond_it 1.139 r_angle_other_deg 0.956 r_scbond_it 0.92 r_symmetry_vdw_refined 0.342 r_mcbond_other 0.238 r_symmetry_vdw_other 0.213 r_xyhbond_nbd_refined 0.209 r_symmetry_hbond_refined 0.206 r_nbd_refined 0.202 r_nbd_other 0.185 r_nbtor_refined 0.185 r_chiral_restr 0.095 r_nbtor_other 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1623 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing