3DEE

CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPqqD-like8091377 4005476 SCOP2 (2021-05-27)
ASCOP2 FamilyNGO1945 N-terminal domain-like8045666 4004603 SCOP2 (2021-05-27)
ASCOP2 SuperfamilyWinged helix DNA-binding domain8091378 3000034 SCOP2 (2021-05-27)
ASCOP2 SuperfamilyNGO1945 N-terminal domain-like8091376 3002500 SCOP2 (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF22106e3deeA2 A: alpha arraysX: Pfam family PF09836 C-terminal domain (From Topology)H: Pfam family PF09836 C-terminal domain (From Topology)T: Pfam family PF09836 C-terminal domainF: PF22106ECOD (1.6)
APF09836e3deeA1 A: alpha arraysX: Pfam family PF09836 N-terminal domain (From Topology)H: Pfam family PF09836 N-terminal domain (From Topology)T: Pfam family PF09836 N-terminal domainF: PF09836ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.150.690 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.2.0)
A3.90.930.50 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22106NGO1945 C-terminal domain (NGO1945_C)NGO1945 C-terminal domainThis domain represents the C-terminal part of a Neisseria protein, Swiss:Q5F5I0, PDB:3dee. It runs from residues 135-220 including a beta sheet containing three antiparallel beta strands and three alpha helices. From genomic context and the fold of t ...This domain represents the C-terminal part of a Neisseria protein, Swiss:Q5F5I0, PDB:3dee. It runs from residues 135-220 including a beta sheet containing three antiparallel beta strands and three alpha helices. From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation [1]. The N-terminal domain found in PDB:3dee is represented in Pfam:PF09836.
Domain

InterPro: Protein Family Classification InterPro Database Homepage