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Structure of the F-spondin domain of mindin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 0-6% PEG2000, 100mM Tris-HCl, 10mM NiCl2, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.92 35.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.6 α = 90 b = 68.027 β = 90 c = 110.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.73 97.3 0.052 13.5 3.08 35173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 93.7 0.163 5.8 2.96 35173
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 1.8 34285 1757 95.2 0.189 0.1841 0.215 0.2112 19.306
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.181 0.185 -0.005
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.565 c_scbond_it 1.79 c_mcangle_it 1.592 c_mcbond_it 1.095
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3279 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 8
Software Software Software Name Purpose d*TREK data scaling CNS refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling