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M. loti cyclic-nucleotide binding domain, cyclic-GMP bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.3 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.202 α = 90 b = 79.594 β = 99.11 c = 49.984 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2004-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.326 87 0.081 0.081 2 3.3 15482
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 64.9 0.155 0.155 3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 30.98 15242 439 93.4 0.211 0.209 0.2192 0.256 0.2655 RANDOM 16.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.58 0.79 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.69 r_dihedral_angle_4_deg 18.457 r_dihedral_angle_3_deg 15.917 r_dihedral_angle_1_deg 5.438 r_scangle_it 3.007 r_scbond_it 1.668 r_angle_refined_deg 1.309 r_mcangle_it 0.929 r_mcbond_it 0.464 r_symmetry_vdw_refined 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.69 r_dihedral_angle_4_deg 18.457 r_dihedral_angle_3_deg 15.917 r_dihedral_angle_1_deg 5.438 r_scangle_it 3.007 r_scbond_it 1.668 r_angle_refined_deg 1.309 r_mcangle_it 0.929 r_mcbond_it 0.464 r_symmetry_vdw_refined 0.35 r_nbtor_refined 0.302 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.152 r_metal_ion_refined 0.128 r_symmetry_metal_ion_refined 0.078 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1891 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOLREP phasing CNS refinement MOSFLM data reduction PDB_EXTRACT data extraction