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Reaction product of paraoxon and S-formylglutathione hydrolase W197I mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PV1 PDB ENTRY ID 1pv1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 290 0.085M Sodium Acetate trihydrate pH 4.6, 0.17M Ammonium Acetate, 25.5% w/v PEG 4000, 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.31 46.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.902 α = 90 b = 68.99 β = 92.58 c = 78.993 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD BRUKER SMART 6000 Multilayer Mirrors 2007-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 78.91 97.8 0.086 11.13 5.05 16544 16188 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.17 2.26 82.8 2.32 2.35
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY ID 1pv1 2.17 78.81 15361 825 97.85 0.19323 0.19003 0.1908 0.25169 0.2491 RANDOM 12.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 0.25 0.1 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.433 r_dihedral_angle_4_deg 19.969 r_dihedral_angle_3_deg 17.134 r_dihedral_angle_1_deg 13.968 r_scangle_it 3.838 r_scbond_it 2.746 r_angle_refined_deg 2.059 r_mcangle_it 1.695 r_mcbond_it 1.072 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.433 r_dihedral_angle_4_deg 19.969 r_dihedral_angle_3_deg 17.134 r_dihedral_angle_1_deg 13.968 r_scangle_it 3.838 r_scbond_it 2.746 r_angle_refined_deg 2.059 r_mcangle_it 1.695 r_mcbond_it 1.072 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.207 r_chiral_restr 0.165 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.116 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2342 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection SAINT data reduction PROTEUM PLUS data scaling AMoRE phasing