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Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 277 NANODROP, 20% PEG 8000, 0.1M CHES pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.542 α = 90 b = 133.127 β = 90 c = 92.544 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97912 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.854 99.2 0.107 0.107 5.9 5 65104 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 96.6 0.716 0.716 1.1 5 4642
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 29.854 65081 3297 99.05 0.139 0.138 0.1387 0.169 0.1653 RANDOM 16.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 1.94 -1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.367 r_dihedral_angle_3_deg 9.509 r_dihedral_angle_4_deg 8.91 r_scangle_it 5.634 r_dihedral_angle_1_deg 4.411 r_scbond_it 3.967 r_mcangle_it 2.429 r_mcbond_it 1.664 r_angle_refined_deg 1.64 r_angle_other_deg 1.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.367 r_dihedral_angle_3_deg 9.509 r_dihedral_angle_4_deg 8.91 r_scangle_it 5.634 r_dihedral_angle_1_deg 4.411 r_scbond_it 3.967 r_mcangle_it 2.429 r_mcbond_it 1.664 r_angle_refined_deg 1.64 r_angle_other_deg 1.396 r_mcbond_other 0.541 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4361 Nucleic Acid Atoms Solvent Atoms 566 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing